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How a unique environment sets Australian chocolate apart

5 August 2026
A hand sprinkles nuts over a rectangle of partially melted chocolate

(Photo credit: Charley's Chocolate Factory  )

University of Queensland research has shown microbes could give Australian-grown chocolate an edge in the global market. 

Working with growers in Far North Queensland, scientists found the cocoa fermentation process may have a bigger influence on the flavour of chocolate than the cocoa tree itself.

Food chemist Dr Marlize Bekker compared the aroma, flavour, and composition of crushed cacao beans, called nibs, from Fishery Falls, Mt Etna, and Shannonvale. 

Dr Bekker said in this study the method and location of fermentation played a greater role in the taste of chocolate than the location of the farm or type of cocoa tree. 

“We had different types of cocoa trees and we thought that would have a big impact on the flavour but the tree’s genotype had a much smaller role to play than the fermentation process itself,” Dr Bekker said. 

“Whatever is in the environment drives the natural fermentation – nothing is introduced – and we know it is critically important for flavour and quality.”

A large pile of freshly harvested cocoa pods in shades of green, yellow, orange, and brown, stacked together. The oval, ridged pods vary in size and ripeness, with some showing natural blemishes and weathering, creating a vibrant display of cacao fruit.

Ripe cocoa pods are harvested from the cocoa tree before being opened to extract the cocoa beans. 

(Photo credit: Charley's Chocolate Factory )

Dr Bekker said understanding the driving forces behind unique flavours allowed producers to control it.

“Cocoa can display a remarkable diversity of flavour characteristics, ranging from classic chocolate and roasted notes to buttery and even tropical aromas,” she said. 

“By understanding Australia’s unique fermentation environment, we can intervene during the process and start to direct those flavour profiles.”

Dr Bekker said the study could help bolster the Australian chocolate industry. 

“This is a preliminary study, and we are hoping to do more work, so we can position Australia on the world stage and show the unique characteristics Australia has,” she said. 

“We don’t want to compete with the mass-produced chocolates; it is about positioning Australia as a premium unique market.”

CEO of Australia’s most awarded chocolate company Charley's Chocolate Factory and CACAO President Chris Jahnke agreed, describing Australia as a “small cottage industry” dependent on ensuring consistent quality. 

A close-up of a large pile of cocoa beans with their outer pulp removed, showing brown to golden-brown beans clustered together. The beans have a slightly glossy, fibrous appearance and vary in size and shape, filling the entire frame.

The cocoa pods are opened to remove the cocoa beans within a week to 10 days after harvesting. There are typically between thirty to forty beans in each pod.

(Photo credit: Charley's Chocolate Factory )

“In Australia we have high labour costs compared to where most cocoa is grown in West Africa – $30 an hour compared to $30 a month – so we are focused on an absolute premium product,” Mr Jahnke said. 

“In order to have a premium product you must control the processes very tightly and understand the likely outcomes.”

Mr Jahnke said working with UQ researchers had given scientific backing to a long-held belief in the industry about the importance of the fermentation process. 

“It’s a small industry so researchers are able to pick up products from different growers, test them and determine what affect distinct locations have on the flavour profile,” he said. 

“The study confirmed the mix of microflora present at a location influences the fermentation which is a key part of flavour development.”

A close-up of smooth, liquid chocolate being dispensed from a stainless steel spout into a clear plastic chocolate bar mould. A person holds the mould steady as the glossy chocolate fills the rectangular cavities during the chocolate-making process.

(Photo credit: Charley's Chocolate Factory )

Dr Bekker said she would like to see the study in the School of Agriculture and Food Sustainability expanded further. 

“We identified the aroma compounds, and we know they have been associated with these sensory characteristics in previous studies,” she said.

“The next step would be to do some sensory trials with people and link the flavour compound to the sensory attributes. 

“It would also be interesting to find out what microbes in the environment are driving the flavour profile using metagenomic testing.”

The research paper is published in Food Chemistry:X 

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